PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5AG055120.8

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LSD

Protein Properties

Length: 114aa MW: 11989.7 Da PI: 7.8678

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5AG055120.8	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	45.8	9.5e-15	20	43	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg Crt+L+YP GApsV+Ca+Cd TRIDC5AG055120.8 20 CGRCRTTLMYPHGAPSVKCAICDY 43 **********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 114 aa Download sequence
HVAVLSILSD QVNNIAHVNC GRCRTTLMYP HGAPSVKCAI CDYITNITNT GINTMSPAPC 60 PRPTSNESAY NASSASVPTP QPQNVTVVVE NPMTVDEKGK LVSNVVVGIT PGKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.1	2e-15	LSD family protein

Link Out ? help Back to Top
Ensembl	TRIDC5AG055120.8