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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | TRIDC5AG059790.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 1019aa MW: 115285 Da PI: 6.7659 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 75.7 | 9.2e-24 | 245 | 331 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
+fY +YA ++GF+vrk s+k+ n+ + +r +vCskeg+r ++ ++ + +++rae rtgC+a+++v+ +++gk++vt+ + +HnH+l
TRIDC5AG059790.1 245 EFYVSYAGTAGFNVRKGCSEKT-ANNVTRSRSYVCSKEGFRPKSVTA--EPKKQRAEIRTGCEAHMTVRITTSGKYVVTEYVADHNHDLE 331
6*****************9999.66669***************9988..9999**********************************995 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 1019 aa Download sequence |
GRKPGKKSTP VIKVKNSVEK GVATAGTGNG QAVPSTENLG RGGDKKDAVE KDVESVVELE 60 EEHVEVEDAA QDGAHDLGDG DDANSDAHEG EMEKEVEVKE KRGRGRPRKA VTEDNALQAC 120 VSTDLGVMAS QCAVDERKKI LNKYLSKRQS RPASGRPAKI VSCQALAERR KRGDGGRFLS 180 SDGPLPSERR SKRLEKQNLK NEKKPESKED EIVEAEQDPE TEVVAGPGGE PKVGMVFLNE 240 DKAYEFYVSY AGTAGFNVRK GCSEKTANNV TRSRSYVCSK EGFRPKSVTA EPKKQRAEIR 300 TGCEAHMTVR ITTSGKYVVT EYVADHNHDL EAPLVDIQIL RSQKLLAKLQ QPPDPPKVVL 360 IPNDYKNYVR TRHTKDMQSG DAQAISEYLQ RMKGKNPSFF CSIQVDEDDQ FRNVFWADVK 420 SVMDFNYFGD VVCVDTRYST SDYCRPLLLF IGVNHHKEPT IFGTAFIYDE SVESFKWLFE 480 TFKSAMSGKQ PRTVLTDRST AISDAVASAW PGTAHRFSLL HLYQNATKVL SDTFQGSETF 540 AHDFSRSLYD YEEEGDFLSS WEILLAKYNL KDNKWLSKLY EDRERWALPY GRDIFCADIA 600 ATLRSDNMDA ILTGVLKTEI DLPYFFNRYD KFLEEKRLAE QQADYLGVQM TQRVPPLRLL 660 WQAANTYTPA LFEMFRLEFE LVLSCMVYCC GEIGPISEYE VTVKNRPQVH FVRFDSSEYM 720 VVCSCKKFEF VGLPCCHVLK VLEIKNIKEL PPQYILKRWR KDAQSESPKE NFGFAAVDED 780 PKFTVSKRHN SLYRTLYKVA AKAAENIEGQ RFMESQYDQL LEQVELLLQA KLHDKPSLST 840 IMRSQQPNLP QNDTSNSEPR RASSKKNKNV ENRRQQQSPL ESSKKKKGRQ GLVEPEEAEL 900 PLRVLAPTIS NDIPNHMSTP TNQFLAPNHI MQAPYVTQQF GLNSLQGFSG MTPFGQMQEQ 960 SPVHLQQPHL QQSPFHGGPQ MHQAPPPDIQ SLQFLSSNPQ LGHQTTDQGQ YTIPVWDFL |
| Nucleic Localization Signal ? help Back to Top | |||
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| No. | Start | End | Sequence |
| 1 | 101 | 109 | KRGRGRPRK |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT4G38180.1 | 1e-109 | FAR1 family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | TRIDC5AG059790.1 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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