PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5AG070840.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

RAV

Protein Properties

Length: 358aa MW: 39114.2 Da PI: 10.0286

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5AG070840.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	39.4	1.5e-12	82	130	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s++kGV + +grW A+I+d r +r+++g+f ++ Aa+a++ a+++++g TRIDC5AG070840.1 82 SRFKGVVPQP-NGRWGAQIYD------RhARVWIGTFPDEDAAARAYDVAALRYRG 130 689*9788.8*****......44******99***********98 PP
2	B3	96.9	1.3e-30	196	291	1	87
EEEE-..-HHHHTT-EE--HHH.HTT.........---.....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkke...esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f+kvltpsdv+k++r+vlpk++ae+h + + + l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL +gD+vv TRIDC5AG070840.1 196 FEKVLTPSDVGKLNRIVLPKQHAEKHiplkrapetT---TaadKCVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLVAGDVVV 285 99***********************998776552...04447899******************************************** PP EEE-SS CS B3 82 Fkldgr 87 F+ ++ TRIDC5AG070840.1 286 FSCSEY 291 *96543 PP

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence
LQKDVPSPKG RCQATEKQQS MGLQILSSTP EHSSQHSSGA STATTESGAA GRLPTPLGLP 60 VAIPDEAVTS RSASASAQSA SSRFKGVVPQ PNGRWGAQIY DRHARVWIGT FPDEDAAARA 120 YDVAALRYRG LDAATNFPRT AASTELAFLA AHSKAEIVDM LRKHTYSDEL RRGLRRGRGI 180 GGRAEPTPSW AREPLFEKVL TPSDVGKLNR IVLPKQHAEK HIPLKRAPET TTAADKCVLL 240 NFEDGEGKVW RFRYSYWNSS QSYVLTKGWS RFVREKGLVA GDVVVFSCSE YGQEKHFFID 300 YKKTMTASGG AAASPPPVVE TGKREEAHVV RLFGVDLAGE MRGLAAPAGL ELFKRQWH

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence

LQKDVPSPKG RCQATEKQQS MGLQILSSTP EHSSQHSSGA STATTESGAA GRLPTPLGLP  60
VAIPDEAVTS RSASASAQSA SSRFKGVVPQ PNGRWGAQIY DRHARVWIGT FPDEDAAARA  120
YDVAALRYRG LDAATNFPRT AASTELAFLA AHSKAEIVDM LRKHTYSDEL RRGLRRGRGI  180
GGRAEPTPSW AREPLFEKVL TPSDVGKLNR IVLPKQHAEK HIPLKRAPET TTAADKCVLL  240
NFEDGEGKVW RFRYSYWNSS QSYVLTKGWS RFVREKGLVA GDVVVFSCSE YGQEKHFFID  300
YKKTMTASGG AAASPPPVVE TGKREEAHVV RLFGVDLAGE MRGLAAPAGL ELFKRQWH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68840.2	4e-84	RAV family protein

Link Out ? help Back to Top
Ensembl	TRIDC5AG070840.1