PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC5BG003960.1
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family YABBY
Protein Properties Length: 207aa    MW: 22701.6 Da    PI: 9.0793
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC5BG003960.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY2282.4e-7091806170
             YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasql.laaeshldeslkee......lleelkveeenlksnv..eke 89 
                        +e+vCyv+CnfCnt+lavsvP +s++++vtvrCGhCt+llsv+l+ +++  ++   +++es   +           +++++ ++s +  +++
  TRIDC5BG003960.1   9 PAEEVCYVHCNFCNTVLAVSVPGNSMLNIVTVRCGHCTNLLSVSLRGQMHSpVPPAAQVQESSLSKpngsngF---IRDHGSVYNSPEfgSSS 98 
                       6899*****************************************9877542555666777766553453332...34444444443311333 PP

             YABBY  90 esastsvsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                       +s+s++ ++ ++  + ++++ + +    rPPekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWah+P+ihfgl
  TRIDC5BG003960.1  99 SSSSSKFRMPTMMFSPQNDLLQEQTlHARPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGL 180
                       4444445555555555555555444479****************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    
MSSSGQITPA EEVCYVHCNF CNTVLAVSVP GNSMLNIVTV RCGHCTNLLS VSLRGQMHSP  60
VPPAAQVQES SLSKPNGSNG FIRDHGSVYN SPEFGSSSSS SSSKFRMPTM MFSPQNDLLQ  120
EQTLHARPPE KRQRVPSAYN RFIKEEIRRI KANNPDISHR EAFSTAAKNW AHYPNIHFGL  180
NPERDGGKRL AVDDAAPAAK KIQGFCS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.15e-59YABBY family protein