PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC5BG003960.2
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family YABBY
Protein Properties Length: 204aa    MW: 22369.2 Da    PI: 9.0793
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC5BG003960.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY2291.2e-7071776170
             YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasql.laaeshldeslkee.....lleelkveeenlksnv..ekee 90 
                        +e+vCyv+CnfCnt+lavsvP +s++++vtvrCGhCt+llsv+l+ +++  ++   +l+ sl ++          +++++ ++s +  ++++
  TRIDC5BG003960.2   7 PAEEVCYVHCNFCNTVLAVSVPGNSMLNIVTVRCGHCTNLLSVSLRGQMHSpVPPAAQLESSLSKPngsngF---IRDHGSVYNSPEfgSSSS 96 
                       6899*****************************************988754267778899998877453332...455555555444113344 PP

             YABBY  91 sastsvsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                       s+s++ ++ ++  + ++++ + +    rPPekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWah+P+ihfgl
  TRIDC5BG003960.2  97 SSSSKFRMPTMMFSPQNDLLQEQTlHARPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGL 177
                       444455555565555556555544479****************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    
SSGQITPAEE VCYVHCNFCN TVLAVSVPGN SMLNIVTVRC GHCTNLLSVS LRGQMHSPVP  60
PAAQLESSLS KPNGSNGFIR DHGSVYNSPE FGSSSSSSSS KFRMPTMMFS PQNDLLQEQT  120
LHARPPEKRQ RVPSAYNRFI KEEIRRIKAN NPDISHREAF STAAKNWAHY PNIHFGLNPE  180
RDGGKRLAVD DAAPAAKKIQ GFCS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.13e-59YABBY family protein