PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5BG009030.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LSD

Protein Properties

Length: 179aa MW: 18771.9 Da PI: 8.4389

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5BG009030.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	40.5	4.4e-13	7	31	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr +L YPrGApsV+Ca+C++V TRIDC5BG009030.1 7 CHGCRSVLLYPRGAPSVCCAVCHAV 31 ************************9 PP
2	zf-LSD1	42.6	9.8e-14	46	70	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gCrtlL+Y+r+A+ VRC++CdtV TRIDC5BG009030.1 46 CVGCRTLLMYTRNATTVRCSCCDTV 70 ************************9 PP
3	zf-LSD1	49	1e-15	87	111	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+t+L+YP+GA+sV+Ca+C+++ TRIDC5BG009030.1 87 CGQCQTVLMYPYGASSVKCAICNFI 111 ***********************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence
MQSQIVCHGC RSVLLYPRGA PSVCCAVCHA VTNAPPPGME MAQLICVGCR TLLMYTRNAT 60 TVRCSCCDTV NLARPAPPVN SIAHVNCGQC QTVLMYPYGA SSVKCAICNF ITNIGMNTVR 120 PLPPTMHAPN GISYSVPSTS APSAQSQNVT VVVENPMTVD DKGKLVSNVV VGVTSGGKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.1	3e-53	LSD family protein

Link Out ? help Back to Top
Ensembl	TRIDC5BG009030.1