PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5BG009030.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LSD

Protein Properties

Length: 85aa MW: 8812.14 Da PI: 9.2388

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5BG009030.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	31.1	4e-10	1	17	9	25
zf-LSD1 9 sYPrGApsVRCalCdtV 25 +YP+GA+sV+Ca+C+++ TRIDC5BG009030.2 1 MYPYGASSVKCAICNFI 17 9**************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 85 aa Download sequence
MYPYGASSVK CAICNFITNI GMNTVRPLPP TMHAPNGISY SVPSTSAPSA QSQNVTVVVE 60 NPMTVDDKGK LVSNVVVGVT SGGKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.1	3e-13	LSD family protein

Link Out ? help Back to Top
Ensembl	TRIDC5BG009030.2