PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5BG017440.4

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 596aa MW: 63309.4 Da PI: 6.3644

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5BG017440.4	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.3	2e-06	219	240	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f ++ C++Gd C +aHg TRIDC5BG017440.4 219 PCPEFKKGAGCRRGDMCEYAHG 240 8****88**********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 596 aa Download sequence
ASEYDGVDVA AVSARLLELV ADDDVTALVD LLAAHPLLAD EPAPWYSPAR GAEPMTPLMV 60 AAAYGSLACL DALLSPPHLA DPNRASASSL STPLHLAAAG GAPSAPTTVS RLLAAGADPT 120 LLDHLHRRPS DLVALPPNSL PLKNHILSLL GARKEWPPDP SLPDIKNGAY ASDDFRMYSF 180 KVRACSRAYS HDWTECPFVH PGENARRRDP RKYHYSCVPC PEFKKGAGCR RGDMCEYAHG 240 VFESWLHPAQ YRTRLCKDGV GCARRVCFFA HTPEELRPLY VSTGSAVPSP RGAMEMAAMG 300 MGLSSPGSSF TPPLSPSGGG SGMAWPQPNL PALCLPGSAG NLHLSRLRTS LSARAMAVDE 360 LLASGDYDNH LGSPASVRSA RGKALVPSNL DELFSAEMAA SHSPRYADQG GAAFSPTHKA 420 AFLNQFQQHQ SLLSPRAAAT PEPVSPMSSR LLAALAQREK MQQQTLRSMS SRDLGSSAPL 480 LVGSPVVGSS WSKWGLPSGT PDWGADNDEL GRLKRSSSFD LRSGANTDEP DLSWVNTLVK 540 EPTPEKSSTN GTMATESIGI LGRSASREGI IDGEEDAATG VIGGWLEQLQ LDEMVV

Sequence ? help Back to Top

Protein Sequence Length: 596 aa Download sequence

ASEYDGVDVA AVSARLLELV ADDDVTALVD LLAAHPLLAD EPAPWYSPAR GAEPMTPLMV  60
AAAYGSLACL DALLSPPHLA DPNRASASSL STPLHLAAAG GAPSAPTTVS RLLAAGADPT  120
LLDHLHRRPS DLVALPPNSL PLKNHILSLL GARKEWPPDP SLPDIKNGAY ASDDFRMYSF  180
KVRACSRAYS HDWTECPFVH PGENARRRDP RKYHYSCVPC PEFKKGAGCR RGDMCEYAHG  240
VFESWLHPAQ YRTRLCKDGV GCARRVCFFA HTPEELRPLY VSTGSAVPSP RGAMEMAAMG  300
MGLSSPGSSF TPPLSPSGGG SGMAWPQPNL PALCLPGSAG NLHLSRLRTS LSARAMAVDE  360
LLASGDYDNH LGSPASVRSA RGKALVPSNL DELFSAEMAA SHSPRYADQG GAAFSPTHKA  420
AFLNQFQQHQ SLLSPRAAAT PEPVSPMSSR LLAALAQREK MQQQTLRSMS SRDLGSSAPL  480
LVGSPVVGSS WSKWGLPSGT PDWGADNDEL GRLKRSSSFD LRSGANTDEP DLSWVNTLVK  540
EPTPEKSSTN GTMATESIGI LGRSASREGI IDGEEDAATG VIGGWLEQLQ LDEMVV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	1e-162	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC5BG017440.4