PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5BG018910.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 541aa MW: 59794.5 Da PI: 8.0778

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5BG018910.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	29.9	9.5e-10	130	152	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C +++++GtC++G +CkF+H+ TRIDC5BG018910.1 130 PDCTYYLKFGTCRFGMKCKFNHP 152 89********************8 PP
2	zf-CCCH	26.4	1.2e-08	250	272	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +e+C++++ G Ck+G++C++ H TRIDC5BG018910.1 250 QEECKYYSTPGGCKFGESCRYLH 272 699*******************9 PP
3	zf-CCCH	29.1	1.7e-09	299	321	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++++r G Ck+ +C+F+H+ TRIDC5BG018910.1 299 KECPYYMRIGSCKFATNCRFHHP 321 79********************9 PP
4	zf-CCCH	20.7	7.1e-07	444	470	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f ++G+Ck+ ++Ck++H++ TRIDC5BG018910.1 444 PGQPECQHFVKSGFCKFKAKCKYHHPR 470 5789*********************96 PP
5	zf-CCCH	26.2	1.4e-08	491	516	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C ++ r+G Ck+G+ C ++H++ TRIDC5BG018910.1 491 DQPVCTYYERYGVCKFGPACMYNHPF 516 6899********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 541 aa Download sequence
HTLDKGFSFF PFVAPPTCSR RRRCLSLSPR RPMADADAKA PPKSNLDADL IASISPSSTS 60 SGARSAVAIE SQFADLAISD ELPKPSGWGD DAVRGIAGSD EITGEITGGK VQPVATADSR 120 PRFPQRHAEP DCTYYLKFGT CRFGMKCKFN HPARKKKNRV KESGSSSIGS NDISNKAFPP 180 DDDQTPKEEY EDPVPNISAE VDLLKGRMEA MQLKIADETE KGFYLKKFKE TEQKVAKEKR 240 KETVSEGSAQ EECKYYSTPG GCKFGESCRY LHYEGKERKT EVAKVELNFL GLPLRPGGKE 300 CPYYMRIGSC KFATNCRFHH PDPTNVVSRD PMLEHENGDI PQQNVQASSQ LNVPVWPADQ 360 RALNEHCAPF LAPASSYSAG MIPPRGMYPS PEWSGYHQVP LGPYYPPGIS FHHFPAPPVN 420 HPMYRGADVP GHQELPSDEY PERPGQPECQ HFVKSGFCKF KAKCKYHHPR SLVPPPTAGA 480 LSPLGLPLRP DQPVCTYYER YGVCKFGPAC MYNHPFNFGH PVSAAGPPLS AQYLTSGNYT 540 V

Sequence ? help Back to Top

Protein Sequence Length: 541 aa Download sequence

HTLDKGFSFF PFVAPPTCSR RRRCLSLSPR RPMADADAKA PPKSNLDADL IASISPSSTS  60
SGARSAVAIE SQFADLAISD ELPKPSGWGD DAVRGIAGSD EITGEITGGK VQPVATADSR  120
PRFPQRHAEP DCTYYLKFGT CRFGMKCKFN HPARKKKNRV KESGSSSIGS NDISNKAFPP  180
DDDQTPKEEY EDPVPNISAE VDLLKGRMEA MQLKIADETE KGFYLKKFKE TEQKVAKEKR  240
KETVSEGSAQ EECKYYSTPG GCKFGESCRY LHYEGKERKT EVAKVELNFL GLPLRPGGKE  300
CPYYMRIGSC KFATNCRFHH PDPTNVVSRD PMLEHENGDI PQQNVQASSQ LNVPVWPADQ  360
RALNEHCAPF LAPASSYSAG MIPPRGMYPS PEWSGYHQVP LGPYYPPGIS FHHFPAPPVN  420
HPMYRGADVP GHQELPSDEY PERPGQPECQ HFVKSGFCKF KAKCKYHHPR SLVPPPTAGA  480
LSPLGLPLRP DQPVCTYYER YGVCKFGPAC MYNHPFNFGH PVSAAGPPLS AQYLTSGNYT  540
V

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.2	3e-68	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC5BG018910.1