PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5BG018910.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 242aa MW: 26725.2 Da PI: 8.6975

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5BG018910.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.3	3.5e-10	130	152	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C +++++GtC++G +CkF+H+ TRIDC5BG018910.2 130 PDCTYYLKFGTCRFGMKCKFNHP 152 89********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence
HTLDKGFSFF PFVAPPTCSR RRRCLSLSPR RPMADADAKA PPKSNLDADL IASISPSSTS 60 SGARSAVAIE SQFADLAISD ELPKPSGWGD DAVRGIAGSD EITGEITGGK VQPVATADSR 120 PRFPQRHAEP DCTYYLKFGT CRFGMKCKFN HPARKKKNRV KESGSSSIGS NDISNKAFPP 180 DDDQTPKEEY EDPVPNISAE VDLLKGRMEA MQLKIADETE KGFYLKKFKE TEQKVYKFLH 240 YK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	8e-11	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC5BG018910.2