PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5BG018910.7

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 237aa MW: 26230.7 Da PI: 7.7916

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5BG018910.7	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.3	2e-06	1	17	10	26
GGTS--TTTTT-SS-SS CS zf-CCCH 10 artGtCkyGdrCkFaHg 26 +r G Ck+ +C+F+H+ TRIDC5BG018910.7 1 MRIGSCKFATNCRFHHP 17 899*************9 PP
2	zf-CCCH	22.2	2.5e-07	140	166	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f ++G+Ck+ ++Ck++H++ TRIDC5BG018910.7 140 PGQPECQHFVKSGFCKFKAKCKYHHPR 166 5789*********************96 PP
3	zf-CCCH	27.7	4.7e-09	187	212	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C ++ r+G Ck+G+ C ++H++ TRIDC5BG018910.7 187 DQPVCTYYERYGVCKFGPACMYNHPF 212 6899********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence
MRIGSCKFAT NCRFHHPDPT NVVSRDPMLE HENGDIPQQN VQASSQLNVP VWPADQRALN 60 EHCAPFLAPA SSYSAGMIPP RGMYPSPEWS GYHQVPLGPY YPPGISFHHF PAPPVNHPMY 120 RGADVPGHQE LPSDEYPERP GQPECQHFVK SGFCKFKAKC KYHHPRSLVP PPTAGALSPL 180 GLPLRPDQPV CTYYERYGVC KFGPACMYNH PFNFGHPVSA AGPPLSAQYL TSGNYTV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	2e-41	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC5BG018910.7