PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5BG018910.8

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 334aa MW: 37413.5 Da PI: 7.9915

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5BG018910.8	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.2	6.6e-09	43	65	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +e+C++++ G Ck+G++C++ H TRIDC5BG018910.8 43 QEECKYYSTPGGCKFGESCRYLH 65 699*******************9 PP
2	zf-CCCH	29.9	9.6e-10	92	114	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++++r G Ck+ +C+F+H+ TRIDC5BG018910.8 92 KECPYYMRIGSCKFATNCRFHHP 114 79********************9 PP
3	zf-CCCH	21.6	3.9e-07	237	263	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f ++G+Ck+ ++Ck++H++ TRIDC5BG018910.8 237 PGQPECQHFVKSGFCKFKAKCKYHHPR 263 5789*********************96 PP
4	zf-CCCH	27	7.5e-09	284	309	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C ++ r+G Ck+G+ C ++H++ TRIDC5BG018910.8 284 DQPVCTYYERYGVCKFGPACMYNHPF 309 6899********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence
MEAMQLKIAD ETEKGFYLKK FKETEQKVAK EKRKETVSEG SAQEECKYYS TPGGCKFGES 60 CRYLHYEGKE RKTEVAKVEL NFLGLPLRPG GKECPYYMRI GSCKFATNCR FHHPDPTNVV 120 SRDPMLEHEN GDIPQQNVQA SSQLNVPVWP ADQRALNEHC APFLAPASSY SAGMIPPRGM 180 YPSPEWSGYH QVPLGPYYPP GISFHHFPAP PVNHPMYRGA DVPGHQELPS DEYPERPGQP 240 ECQHFVKSGF CKFKAKCKYH HPRSLVPPPT AGALSPLGLP LRPDQPVCTY YERYGVCKFG 300 PACMYNHPFN FGHPVSAAGP PLSAQYLTSG NYTV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.1	9e-65	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC5BG018910.8