PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5BG018910.9

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 508aa MW: 56001.3 Da PI: 8.4214

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5BG018910.9	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	30	8.8e-10	118	140	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C +++++GtC++G +CkF+H+ TRIDC5BG018910.9 118 PDCTYYLKFGTCRFGMKCKFNHP 140 89********************8 PP
2	zf-CCCH	26.5	1.1e-08	217	239	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +e+C++++ G Ck+G++C++ H TRIDC5BG018910.9 217 QEECKYYSTPGGCKFGESCRYLH 239 699*******************9 PP
3	zf-CCCH	29.2	1.6e-09	266	288	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++++r G Ck+ +C+F+H+ TRIDC5BG018910.9 266 KECPYYMRIGSCKFATNCRFHHP 288 79********************9 PP
4	zf-CCCH	20.8	6.6e-07	411	437	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f ++G+Ck+ ++Ck++H++ TRIDC5BG018910.9 411 PGQPECQHFVKSGFCKFKAKCKYHHPR 437 5789*********************96 PP
5	zf-CCCH	26.3	1.3e-08	458	483	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C ++ r+G Ck+G+ C ++H++ TRIDC5BG018910.9 458 DQPVCTYYERYGVCKFGPACMYNHPF 483 6899********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence
VAPPTCSRRR RCLSLSPRRP MADADAKAPP KSNLDADLIA SISPSSTSSG ARSAVAIESQ 60 FADLAISDEL PKPSGWGDDA VRGIAGSDEI TGEITGGKVQ PVATADSRPR FPQRHAEPDC 120 TYYLKFGTCR FGMKCKFNHP ARKKKNRVKE SGSSSIGSND ISNKAFPPDD DQGRMEAMQL 180 KIADETEKGF YLKKFKETEQ KVAKEKRKET VSEGSAQEEC KYYSTPGGCK FGESCRYLHY 240 EGKERKTEVA KVELNFLGLP LRPGGKECPY YMRIGSCKFA TNCRFHHPDP TNVVSRDPML 300 EHENGDIPQQ NVQASSQLNV PVWPADQRAL NEHCAPFLAP ASSYSAGMIP PRGMYPSPEW 360 SGYHQVPLGP YYPPGISFHH FPAPPVNHPM YRGADVPGHQ ELPSDEYPER PGQPECQHFV 420 KSGFCKFKAK CKYHHPRSLV PPPTAGALSP LGLPLRPDQP VCTYYERYGV CKFGPACMYN 480 HPFNFGHPVS AAGPPLSAQY LTSGNYTV

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence

VAPPTCSRRR RCLSLSPRRP MADADAKAPP KSNLDADLIA SISPSSTSSG ARSAVAIESQ  60
FADLAISDEL PKPSGWGDDA VRGIAGSDEI TGEITGGKVQ PVATADSRPR FPQRHAEPDC  120
TYYLKFGTCR FGMKCKFNHP ARKKKNRVKE SGSSSIGSND ISNKAFPPDD DQGRMEAMQL  180
KIADETEKGF YLKKFKETEQ KVAKEKRKET VSEGSAQEEC KYYSTPGGCK FGESCRYLHY  240
EGKERKTEVA KVELNFLGLP LRPGGKECPY YMRIGSCKFA TNCRFHHPDP TNVVSRDPML  300
EHENGDIPQQ NVQASSQLNV PVWPADQRAL NEHCAPFLAP ASSYSAGMIP PRGMYPSPEW  360
SGYHQVPLGP YYPPGISFHH FPAPPVNHPM YRGADVPGHQ ELPSDEYPER PGQPECQHFV  420
KSGFCKFKAK CKYHHPRSLV PPPTAGALSP LGLPLRPDQP VCTYYERYGV CKFGPACMYN  480
HPFNFGHPVS AAGPPLSAQY LTSGNYTV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.2	8e-73	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC5BG018910.9