PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5BG019490.10

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 1134aa MW: 127335 Da PI: 7.3965

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5BG019490.10	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.5	0.00044	1015	1038	1	22
EEET..TTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt 22 ++C C++sFs++ +L H r TRIDC5BG019490.10 1015 FPCDieGCDMSFSSQQDLLLHKRD 1038 789999***************985 PP
2	zf-C2H2	10.7	0.0017	1098	1124	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C Cg++F+ s++ rH r+ H TRIDC5BG019490.10 1098 YECMvpGCGQTFRFVSDFSRHKRKtgH 1124 788888****************99666 PP

Sequence ? help Back to Top
Protein Sequence Length: 1134 aa Download sequence
LQVAKEAAIR RASTNCGPMI SHYQLLYELA LSLSQREPKD FHTLPRSSRL RDKKKKDEGD 60 TMVKEKFVGS VIENNNLLSI LLDKSSCIIV PETPFPPTSF PTMMEPELTV KQSLTGGHCS 120 ISQQAVHNMS VDVALDKSIV VENMSHSQSV TEASLSAYNR RKLYETKYGE LGTAAFCLSP 180 SKLQSGVTDK DKRGGLLDQG RLPCVQCGVL SFACVAIIQP REAAVQFVLS REGISSSAKP 240 GEVSESDGIS NWITKNIEMV PQQATGQASE ALSVSLAHVS DRCGQLYSRN NNGSTSALGL 300 LASTYGSSDS EEESNQGKDN QLLETSVSFS STVQRQRSNS HLYEECCEAK TTTSLLKSIE 360 DNSTTITRCG RDTDINHLAK LREQGTTYDQ CSVYIDLAND LTISGVKAYS DTHVTTAKSS 420 IEPDVLTQLK YNNDSCRMHV FCLEHALGTW TQLQKIGGAN VMLLCHPEYP RAESAAKFIA 480 EELGLKPDWK DVAFEEATDD DIRRIQLALH DEDAEPASSD WAVKMGINIY YSAKQSKSPL 540 YSKQIPYNSI IYEAFGQENP DNLTDYGRQR SGVTKKRVAG CWCGKVWMSN QVHPFLVREH 600 EEHNHAIVCS KVMLGANYHE IVYDEPSLTC NTMVNCSPSK RISRRKGRDS IEKSGARKKR 660 CSANDEATLH CSSIGMNSKT ISDQPRNFDD HDKHEGGKIT EAPSTQQYQQ YTLQSMNMKS 720 SSNKPKDYKG NRNFLDLYDE ANDVDCWFNI DSGDSTAIRH LEDSRQQEFG TVKAKSPGKL 780 QGNMRKSSKC KAGDDSLNGD KKVQKMNKKS ISRKQKDVEI NTQFREEYDE DNNWEEVPEG 840 KDHDVKVESR AKTRSGEDDK RNNNSHELND EYNDMDCWHD IHRGDNATMG NLDNSPVQRL 900 EAAEVKSGGK LHCCKRKSSK GKAKDNYSNG DEKLQMLNIE SISRKQKSDS QFDEGCGRDN 960 ALDSLLNDVD EATRENCYEV REEEMDGMEV KPRGKVQTGK RKTSRCQAGD KAAKFPCDIE 1020 GCDMSFSSQQ DLLLHKRDIC PVKGCKKKFF CHKYLLQHRK VHMDERPLNC EWKGCKKTFK 1080 WPWARTEHMR VHTGVRPYEC MVPGCGQTFR FVSDFSRHKR KTGHSSGKKN KEST

Sequence ? help Back to Top

Protein Sequence Length: 1134 aa Download sequence

LQVAKEAAIR RASTNCGPMI SHYQLLYELA LSLSQREPKD FHTLPRSSRL RDKKKKDEGD  60
TMVKEKFVGS VIENNNLLSI LLDKSSCIIV PETPFPPTSF PTMMEPELTV KQSLTGGHCS  120
ISQQAVHNMS VDVALDKSIV VENMSHSQSV TEASLSAYNR RKLYETKYGE LGTAAFCLSP  180
SKLQSGVTDK DKRGGLLDQG RLPCVQCGVL SFACVAIIQP REAAVQFVLS REGISSSAKP  240
GEVSESDGIS NWITKNIEMV PQQATGQASE ALSVSLAHVS DRCGQLYSRN NNGSTSALGL  300
LASTYGSSDS EEESNQGKDN QLLETSVSFS STVQRQRSNS HLYEECCEAK TTTSLLKSIE  360
DNSTTITRCG RDTDINHLAK LREQGTTYDQ CSVYIDLAND LTISGVKAYS DTHVTTAKSS  420
IEPDVLTQLK YNNDSCRMHV FCLEHALGTW TQLQKIGGAN VMLLCHPEYP RAESAAKFIA  480
EELGLKPDWK DVAFEEATDD DIRRIQLALH DEDAEPASSD WAVKMGINIY YSAKQSKSPL  540
YSKQIPYNSI IYEAFGQENP DNLTDYGRQR SGVTKKRVAG CWCGKVWMSN QVHPFLVREH  600
EEHNHAIVCS KVMLGANYHE IVYDEPSLTC NTMVNCSPSK RISRRKGRDS IEKSGARKKR  660
CSANDEATLH CSSIGMNSKT ISDQPRNFDD HDKHEGGKIT EAPSTQQYQQ YTLQSMNMKS  720
SSNKPKDYKG NRNFLDLYDE ANDVDCWFNI DSGDSTAIRH LEDSRQQEFG TVKAKSPGKL  780
QGNMRKSSKC KAGDDSLNGD KKVQKMNKKS ISRKQKDVEI NTQFREEYDE DNNWEEVPEG  840
KDHDVKVESR AKTRSGEDDK RNNNSHELND EYNDMDCWHD IHRGDNATMG NLDNSPVQRL  900
EAAEVKSGGK LHCCKRKSSK GKAKDNYSNG DEKLQMLNIE SISRKQKSDS QFDEGCGRDN  960
ALDSLLNDVD EATRENCYEV REEEMDGMEV KPRGKVQTGK RKTSRCQAGD KAAKFPCDIE  1020
GCDMSFSSQQ DLLLHKRDIC PVKGCKKKFF CHKYLLQHRK VHMDERPLNC EWKGCKKTFK  1080
WPWARTEHMR VHTGVRPYEC MVPGCGQTFR FVSDFSRHKR KTGHSSGKKN KEST

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	51	57	RDKKKKD
2	644	660	RRKGRDSIEKSGARKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	2e-84	C2H2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC5BG019490.10