PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5BG020600.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

GATA

Protein Properties

Length: 468aa MW: 50638.7 Da PI: 9.3778

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5BG020600.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	35.5	1.4e-11	110	144	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C++ +Tp+ R+gp g tLCnaCG+ y k+g+ TRIDC5BG020600.2 110 CLHCKAVETPQRRSGPMGRGTLCNACGVWYSKNGT 144 99******************************997 PP
2	GATA	32.6	1.1e-10	200	234	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+++ plW +g+ g +++C aCG++y+k +l TRIDC5BG020600.2 200 CLHCGSSEPPLWIEGSMGRREVCTACGMRYKKGRL 234 99******************************986 PP
3	GATA	55.1	1e-17	304	338	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+++Tp+WR+gp g tLCnaCG++yr +l TRIDC5BG020600.2 304 CQHCGSSETPQWREGPKGRATLCNACGVRYRQGRL 338 *******************************9886 PP

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence
MAGGGGAGGK EDGGTEPLLL SVLALPATAL PAVVSRLEAA VPRKARSYLP RNVPSAWWSL 60 RIPFIQPLPP AGDPANEEEG RRFPRPQRVQ VAPSLDPGTA DKPPKRLKRC LHCKAVETPQ 120 RRSGPMGRGT LCNACGVWYS KNGTLPEHLP VSSPIVDSPL ENPIWEPEVP GAIYLVRKSA 180 TERMPPRTEA APAPRPGTSC LHCGSSEPPL WIEGSMGRRE VCTACGMRYK KGRLLPECRP 240 AECSVTDSRQ ESPVINSPPE SPIWEPEAPP SVHLPRKPSK KKKRRRSRSE APSAPWPANK 300 GKRCQHCGSS ETPQWREGPK GRATLCNACG VRYRQGRLLP EYRPMASPTF VPTKHANSHR 360 KVLQLHRTRQ SNDEHPSPLP ADSVTNLPPI RDELPTTSTA GLASEDPTDA PGYTDNPINV 420 PSSLDSLLLD GPSAPLIILM LGNFKLSITE GHCTGPSSDQ TSSVNSTI

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence

MAGGGGAGGK EDGGTEPLLL SVLALPATAL PAVVSRLEAA VPRKARSYLP RNVPSAWWSL  60
RIPFIQPLPP AGDPANEEEG RRFPRPQRVQ VAPSLDPGTA DKPPKRLKRC LHCKAVETPQ  120
RRSGPMGRGT LCNACGVWYS KNGTLPEHLP VSSPIVDSPL ENPIWEPEVP GAIYLVRKSA  180
TERMPPRTEA APAPRPGTSC LHCGSSEPPL WIEGSMGRRE VCTACGMRYK KGRLLPECRP  240
AECSVTDSRQ ESPVINSPPE SPIWEPEAPP SVHLPRKPSK KKKRRRSRSE APSAPWPANK  300
GKRCQHCGSS ETPQWREGPK GRATLCNACG VRYRQGRLLP EYRPMASPTF VPTKHANSHR  360
KVLQLHRTRQ SNDEHPSPLP ADSVTNLPPI RDELPTTSTA GLASEDPTDA PGYTDNPINV  420
PSSLDSLLLD GPSAPLIILM LGNFKLSITE GHCTGPSSDQ TSSVNSTI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	280	285	KKKKRR
2	280	286	KKKKRRR
3	281	287	KKKKRRR
4	281	286	KKKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32890.1	2e-30	GATA family protein

Link Out ? help Back to Top
Ensembl	TRIDC5BG020600.2