PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5BG027590.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MYB

Protein Properties

Length: 339aa MW: 36178 Da PI: 9.5348

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5BG027590.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.8	1e-17	21	66	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd+ l ++v ++G ++W++I++ ++ gR++k+c++rw + TRIDC5BG027590.3 21 KGPWSPEEDDALQRLVGRHGARNWSLISKSIP-GRSGKSCRLRWCNQ 66 79****************************.*********985 PP
2	Myb_DNA-binding	51.8	1.9e-16	75	117	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T++Ed+ +++a++++G++ W+tIar + gRt++ +k++w++ TRIDC5BG027590.3 75 PFTPDEDDTILRAHARFGNK-WATIARLLS-GRTDNAIKNHWNST 117 89****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence
LPAAMAACRG GGGGKDVDRI KGPWSPEEDD ALQRLVGRHG ARNWSLISKS IPGRSGKSCR 60 LRWCNQLSPQ VEHRPFTPDE DDTILRAHAR FGNKWATIAR LLSGRTDNAI KNHWNSTLKR 120 KYSSSSSASA SPAEDGAAMA DDEDRRPLKR TSSDGYPGLC FSPGSPSGSD LSDSSHQSLP 180 SVMPSAASQQ PHVYRPVARA GGVVVLPTAT PQPPQPSPPS PPPPPPPPAT SLSLSLSLPG 240 LDAPEPAPVA QPMSMPPPPA PVQPAAAPQM PPPPPMPFQL QPPPQPQPRT PAPFNGEFLS 300 MMQEMIRIEV RNYMSGFDPR SPADGVHAAK RMMSMAKIE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23290.1	2e-66	MYB family protein

Link Out ? help Back to Top
Ensembl	TRIDC5BG027590.3