PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5BG041450.6

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 1113aa MW: 120923 Da PI: 4.601

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5BG041450.6	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.3	0.00012	347	369	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++C+ +F ++s +++H+ + H TRIDC5BG041450.6 347 ECKKCNLTFEDQSAYVQHQLSfH 369 5******************9988 PP

Sequence ? help Back to Top
Protein Sequence Length: 1113 aa Download sequence
MGTEVVPVVD LGALSQSELV ALAAASPYAV DPRRGRRDAD LLPPPKIDRA VFNESAGSRK 60 QTFSRRRAAT NLPHNLTPST ASSSAVAAPT EEDSENRLIV FHLQQLFARD DPSYLPPPPP 120 IPLQQLPPIP IPAPTIPVPT PPVASVPIQQ LPDPDRDLTN PKGVAVDLAR LAELVDPYGE 180 EIRNRTAGLA LESELLGFMN ELEGQWGSRR RRRKFVEAAI FGDHLPRRWK LILGIKRKER 240 AAWINCRRYV SPRGHQFATC REVSSYFMSL LGYVEAKPTT VQNNDMGVRD LSAVNTAGLH 300 QQNDSTRDMQ SAVSATSVTL SIHNGDSQGQ RQKPYKDEAP IEAVRKECKK CNLTFEDQSA 360 YVQHQLSFHQ RKAKRRKVDK SIGLGVSKDG KLETQESQRT SEDKPGYFGH GVADVKSQGQ 420 SPAELFGGAS SGDVGAQLSL AAAPCGLQEI TALPEQVEEP SAGEPVSGHQ DLPQETTGLP 480 QQEKELSATE PFAGHQKEHV DNSGDHEIHD GACHIAEEPL AFDVGSNLST CKSPEPEVHE 540 HDSSKDLEFS IADCSGSFDR SHEISKIPQD VPCTADAPGE KSCSDDPMDC ADITLPKQVP 600 EHCDMLDHKF RGFPGGTGFN DQVGNNPLSA NLDEPDLSSN SMEVDNSKIA CKFGDMLNST 660 SSEYDKPVVD QIDRGVTALK NDAINIDDGM NIDVRIKEVN LNSCLDTISS PVSGANCETS 720 NALHDGNRSS ILAQCFGGSS NDDNVCQDES FVNQNNVSKA EIFVNQSNDM VYQSNLNMNP 780 ISPPQISVDY FTNCSMNSEI KNNDNRRDDN AKEQFVNSRN ISSNEPGFDA EAYNNDIFTG 840 AMAETSFAQL NNAMNMKTDY SSCYSISDLN TLTGGTATDG IDFHGMRSSF VSGSTSRSEP 900 NELDFDIKGS MLEALERSDS DLETQYNGGD PAIDSLPAAG TSGTSVDDFM SMHTNFGSLT 960 SLVRSVEGGP MSRLIQDQCD LQLGFGAQKQ QIYPSFEEHL RMASAGAPQF GNMGRHNPMP 1020 VPVPVPEPTL MLGYEPTLML GYAPQFGSCP PVQLGWDLSK MVGVLQSVCV WCNTRFQHFG 1080 TAEQQNDSVG FICPACKDKT SGHLGTLNNG SLL

Sequence ? help Back to Top

Protein Sequence Length: 1113 aa Download sequence

MGTEVVPVVD LGALSQSELV ALAAASPYAV DPRRGRRDAD LLPPPKIDRA VFNESAGSRK  60
QTFSRRRAAT NLPHNLTPST ASSSAVAAPT EEDSENRLIV FHLQQLFARD DPSYLPPPPP  120
IPLQQLPPIP IPAPTIPVPT PPVASVPIQQ LPDPDRDLTN PKGVAVDLAR LAELVDPYGE  180
EIRNRTAGLA LESELLGFMN ELEGQWGSRR RRRKFVEAAI FGDHLPRRWK LILGIKRKER  240
AAWINCRRYV SPRGHQFATC REVSSYFMSL LGYVEAKPTT VQNNDMGVRD LSAVNTAGLH  300
QQNDSTRDMQ SAVSATSVTL SIHNGDSQGQ RQKPYKDEAP IEAVRKECKK CNLTFEDQSA  360
YVQHQLSFHQ RKAKRRKVDK SIGLGVSKDG KLETQESQRT SEDKPGYFGH GVADVKSQGQ  420
SPAELFGGAS SGDVGAQLSL AAAPCGLQEI TALPEQVEEP SAGEPVSGHQ DLPQETTGLP  480
QQEKELSATE PFAGHQKEHV DNSGDHEIHD GACHIAEEPL AFDVGSNLST CKSPEPEVHE  540
HDSSKDLEFS IADCSGSFDR SHEISKIPQD VPCTADAPGE KSCSDDPMDC ADITLPKQVP  600
EHCDMLDHKF RGFPGGTGFN DQVGNNPLSA NLDEPDLSSN SMEVDNSKIA CKFGDMLNST  660
SSEYDKPVVD QIDRGVTALK NDAINIDDGM NIDVRIKEVN LNSCLDTISS PVSGANCETS  720
NALHDGNRSS ILAQCFGGSS NDDNVCQDES FVNQNNVSKA EIFVNQSNDM VYQSNLNMNP  780
ISPPQISVDY FTNCSMNSEI KNNDNRRDDN AKEQFVNSRN ISSNEPGFDA EAYNNDIFTG  840
AMAETSFAQL NNAMNMKTDY SSCYSISDLN TLTGGTATDG IDFHGMRSSF VSGSTSRSEP  900
NELDFDIKGS MLEALERSDS DLETQYNGGD PAIDSLPAAG TSGTSVDDFM SMHTNFGSLT  960
SLVRSVEGGP MSRLIQDQCD LQLGFGAQKQ QIYPSFEEHL RMASAGAPQF GNMGRHNPMP  1020
VPVPVPEPTL MLGYEPTLML GYAPQFGSCP PVQLGWDLSK MVGVLQSVCV WCNTRFQHFG  1080
TAEQQNDSVG FICPACKDKT SGHLGTLNNG SLL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	209	238	RRRRRKFVEAAIFGDHLPRRWKLILGIKRK
2	210	239	RRRRRKFVEAAIFGDHLPRRWKLILGIKRK
3	211	240	RRRRRKFVEAAIFGDHLPRRWKLILGIKRK
4	370	377	QRKAKRRK

Link Out ? help Back to Top
Ensembl	TRIDC5BG041450.6