PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5BG046860.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MIKC_MADS

Protein Properties

Length: 138aa MW: 15827.2 Da PI: 10.7978

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5BG046860.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	101.3	3.5e-32	35	85	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s TRIDC5BG046860.2 35 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 85 79***********************************************96 PP
2	K-box	15.9	5.3e-07	111	138	9	36
K-box 9 leeakaeslqqelakLkkeienLqreqR 36 +e++ +s+++e+ kLk+++enLqr+qR TRIDC5BG046860.2 111 KENELVQSSRNEYLKLKARVENLQRTQR 138 46667899******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 138 aa Download sequence
RVARRRRRRP IDLELAVPDA AAGGDGMGRG RVELKRIENK INRQVTFAKR RNGLLKKAYE 60 LSVLCDAEVA LIIFSNRGKL YEFCSGQSMP KTLERYQKCS YGGPDTAVQN KENELVQSSR 120 NEYLKLKARV ENLQRTQR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1	9	RVARRRRRR
2	4	9	RRRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24260.3	2e-53	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	TRIDC5BG046860.2