PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC5BG051940.3
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 379aa    MW: 42263.8 Da    PI: 7.0698
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC5BG051940.3genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS412.73.4e-1263037821373
              GRAS  21 qalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervH 113
                       + ++ +l++++s +gdp qRl ay++e+L arla+s++++ykal+++e +   ss+ ++++++++e++P++kf+++ aN aI eav+ge+++H
  TRIDC5BG051940.3  30 DMMVPELRKMVSVSGDPHQRLGAYIVEGLVARLASSGHSIYKALKCKEPR---SSDLMSYMHFLYEACPYFKFGYMSANGAIAEAVKGEDMIH 119
                       557889*******************************************9...999************************************* PP

              GRAS 114 iiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaV 204
                       iiDf+isqG+QW++LlqaLa+Rp+gpp++RiTg++++ s   +   l  +g+rL+++A  ++vpfef+  va + +++e e+L v pgEalaV
  TRIDC5BG051940.3 120 IIDFGISQGAQWIPLLQALATRPGGPPTVRITGIDDSLSAyaRGGGLDLVGRRLSHIAGLCKVPFEFHS-VAVAGDEVEEEHLMVIPGEALAV 211
                       ************************************877788999************************.7999******************* PP

              GRAS 205 nlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297
                       n+ l+lh+++de vs++++rd++L+lvkslsPkvv++veqe+++n+ +F +rf+e+l+yy+a+f+s++ +lpr+ ++ri +E+++l+reivn+
  TRIDC5BG051940.3 212 NFTLELHHIPDEAVSTANHRDRILRLVKSLSPKVVTLVEQELNTNTVPFKQRFAETLDYYTAIFESIDLTLPRD-DKRIDMEQHCLAREIVNI 303
                       ***********************************************************************886.679*************** PP

              GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                       vacegaer+erhe ++kW+ rl+++GF+p pls+ +++++++ll+ ++ + y++ e++g l+lgWk++pLv+ SaW
  TRIDC5BG051940.3 304 VACEGAERVERHEVFGKWKGRLMMVGFRPWPLSSLVNATIRTLLQSYSAN-YQLAERDGVLYLGWKNKPLVVSSAW 378
                       ************************************************77.************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    
MRLIDHLKRS MEALGSQLSG HANLKTLALD MMVPELRKMV SVSGDPHQRL GAYIVEGLVA  60
RLASSGHSIY KALKCKEPRS SDLMSYMHFL YEACPYFKFG YMSANGAIAE AVKGEDMIHI  120
IDFGISQGAQ WIPLLQALAT RPGGPPTVRI TGIDDSLSAY ARGGGLDLVG RRLSHIAGLC  180
KVPFEFHSVA VAGDEVEEEH LMVIPGEALA VNFTLELHHI PDEAVSTANH RDRILRLVKS  240
LSPKVVTLVE QELNTNTVPF KQRFAETLDY YTAIFESIDL TLPRDDKRID MEQHCLAREI  300
VNIVACEGAE RVERHEVFGK WKGRLMMVGF RPWPLSSLVN ATIRTLLQSY SANYQLAERD  360
GVLYLGWKNK PLVVSSAWH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.11e-171GRAS family protein