PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5BG059070.7

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LSD

Protein Properties

Length: 147aa MW: 15607 Da PI: 8.5689

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5BG059070.7	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	40.1	5.8e-13	15	39	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+r+A VRC++C tV TRIDC5BG059070.7 15 CGGCRTLLMYTRNADTVRCSCCSTV 39 ***********************99 PP
2	zf-LSD1	45.3	1.4e-14	53	76	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg Crt+L+YP GApsV+Ca+Cd TRIDC5BG059070.7 53 CGRCRTTLMYPHGAPSVKCAICDY 76 **********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 147 aa Download sequence
RATPGARVEM AQLICGGCRT LLMYTRNADT VRCSCCSTVN LVRPVNNIAH VNCGRCRTTL 60 MYPHGAPSVK CAICDYITNI TNTGINTMPP APCPRPTSNE SAYNASSASV PTPQPQNVTV 120 VVENPMTVDE KGKLVSNVVV GITPGKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.1	5e-33	LSD family protein

Link Out ? help Back to Top
Ensembl	TRIDC5BG059070.7