PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5BG061180.5

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MIKC_MADS

Protein Properties

Length: 173aa MW: 20111.3 Da PI: 9.9457

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5BG061180.5	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	86.6	1.4e-27	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rienk+ rqvtf+kRrng+lKKA+ELS LCdaeva+++fs+ g+ly +ss TRIDC5BG061180.5 10 RIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALVLFSHAGRLYQFSS 59 9***********************************************96 PP
2	K-box	87.9	1.9e-29	84	172	10	98
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + ++++ + e+ Lk+++e Lq++qR+llGedL +Ls eL qLe+q+ k l++iRs+K+++ll+++ +l++ke+ l+++n++L++k+ TRIDC5BG061180.5 84 TRDEMQNNYLEYMELKARVEVLQHSQRNLLGEDLAPLSTTELDQLESQVGKTLRQIRSRKTQVLLDEMCDLKRKEQILEDANMTLKRKV 172 56789**********************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence
MGRGKVVLQR IENKISRQVT FAKRRNGLLK KAYELSLLCD AEVALVLFSH AGRLYQFSSS 60 SNMLKTLERY QRYIFASQDA VVPTRDEMQN NYLEYMELKA RVEVLQHSQR NLLGEDLAPL 120 STTELDQLES QVGKTLRQIR SRKTQVLLDE MCDLKRKEQI LEDANMTLKR KVT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02310.1	5e-71	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	TRIDC5BG061180.5