PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC5BG065350.2
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 260aa    MW: 29557.5 Da    PI: 11.8864
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC5BG065350.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.54e-07212231625
                       -SGGGGTS--TTTTT-SS-S CS
           zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                       C+f+++t  C++G rC++ H
  TRIDC5BG065350.2 212 CPFYLKTAACRFGVRCSRVH 231
                       ******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    
RPAISRRRRR GARGGRSGRR SAAGARAGRR RRPRGLQRRR SPPTQRRGAA SESSRRPTPP  60
RPTARAAPSR TPSASGSRRP PRVPPRRQPR RLRKKRRGPP RLPHARRSPF NDDHRDETED  120
DGEWEYVEDG PAEIIWQGNE IIVKKKKVKI PKKAEDKPPS QEEERPTSNP LPPQSVAVAS  180
QRREPSLSAR ELLEKVAQET PNFGTEQDKA HCPFYLKTAA CRFGVRCSRV HFYPDKSCTL  240
LMKNMYNGPG LVLEQDEGLE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12940RRRRPRGLQRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.12e-52C3H family protein