PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC6AG001250.1
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MIKC_MADS
Protein Properties Length: 194aa    MW: 21191.2 Da    PI: 10.0065
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC6AG001250.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.81.2e-274695251
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      rie+ + rqvtfskRr g+lKKA+EL vLCdaeva+i+fs++g+lyey+s
  TRIDC6AG001250.1 46 RIEDATSRQVTFSKRRSGLLKKAFELGVLCDAEVALIVFSPRGRLYEYAS 95
                      8***********************************************86 PP
2K-box54.84.1e-19119183670
             K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70 
                       ++++ +a  + ++ e++ Lk +i+ ++  qR+l Ge+L+s+s  eLq+Le qLeksl+ iR+kK+
  TRIDC6AG001250.1 119 TVEQPAAGVQMCRSEATALKHKIDAIEAYQRKLSGEGLGSCSAHELQELELQLEKSLSCIRQKKS 183
                       444677888999****************************************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    
MAPSSPPAAA VAAEGDEQQQ QIVVAAAAAA AAKKGGGKRG RREMRRIEDA TSRQVTFSKR  60
RSGLLKKAFE LGVLCDAEVA LIVFSPRGRL YEYASAPDLQ KTIDRYLNHT KGTSTNEKTV  120
EQPAAGVQMC RSEATALKHK IDAIEAYQRK LSGEGLGSCS AHELQELELQ LEKSLSCIRQ  180
KKSSNRKCWI KSWS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.11e-47MIKC_MADS family protein