PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6AG006620.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LBD

Protein Properties

Length: 231aa MW: 25222.2 Da PI: 5.2521

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6AG006620.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	120.7	8e-38	20	120	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C aCk+lrrkC+++Cv+ap+f++eq +++f ++hk+FGasnv+kll+ lp +r++a++++ yeA+ar++dPvyG+v++i++lqqq +l+a TRIDC6AG006620.1 20 PCGACKFLRRKCVSGCVFAPHFCHEQgAAHFGAIHKVFGASNVSKLLTGLPSIDRREAAATISYEAQARLHDPVYGCVAHIFALQQQAVNLQA 112 7***********************89************************************************************* PP DUF260 93 elallkee 100 +l++lk++ TRIDC6AG006620.1 113 QLESLKAQ 120 *99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence
QEYNTSIDQV AGAMTGFPSP CGACKFLRRK CVSGCVFAPH FCHEQGAAHF GAIHKVFGAS 60 NVSKLLTGLP SIDRREAAAT ISYEAQARLH DPVYGCVAHI FALQQQAVNL QAQLESLKAQ 120 APQGYTNTCS VSSPEEDSIK AKVMAYQKGE ARMPRPAELC PAVKSESESY FGNDLMTCTS 180 MQSSQDYNIS HVYTPDYTCP FNDEGIHSST MLPVDIQEYL QENGNYGTED L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42440.1	1e-50	LBD family protein

Link Out ? help Back to Top
Ensembl	TRIDC6AG006620.1