PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6AG015580.6

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HB-PHD

Protein Properties

Length: 752aa MW: 83972.8 Da PI: 7.7427

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6AG015580.6	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	30.4	6.4e-10	454	500	6	52
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 ++ +e +++L + F+++ ps+e +e L+++lg++ +++ WF+N R TRIDC6AG015580.6 454 RIPPEAVQVLRKSFAESELPSREVKENLSTELGISFEKIDKWFKNTR 500 667899***************************************99 PP
2	PHD	33	1.4e-11	201	254	1	50
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCke 50 +C+ C++ s ++++++C+g Ck ++H kCl+++l+++ g wlC+ C + TRIDC6AG015580.6 201 ICSRCKSpeSVPNNKFIFCEGaCKMAYHEKCLEPPLDKSLP-TGgpGWLCKFCLC 254 6999987778***966**********95555.4559*****86 PP

Sequence ? help Back to Top
Protein Sequence Length: 752 aa Download sequence
MNNSDKKSAC SIPRRSSERR KQSSSELVSS AKRSTGHNTS SSYKPDHCSP PKRTVRTVRN 60 VNLAKYIKNK YYRSPLSKRQ ASNAATGKTA TGPVRRRNRK RRRHNTDCDE ATRMERRARY 120 LLVKIKSEQN LIDAYSGDGW NGHSREKLKP EKELQRAQKQ IIKCKIAIRD IIHQLDLYSS 180 SGSMEDSVMP PDESVNPDNT ICSRCKSPES VPNNKFIFCE GACKMAYHEK CLEPPLDKSL 240 PTGGPGWLCK FCLCKMKILE AVNAHLGTSL TVMCPSKDIF KEATKQMDSE DGLGEDWLSE 300 YSGDEDYDPE ENDFTSSSLD SGEESISDQS NCSGSPLYSP NDDIPGFISA DFTDAEGFYH 360 TNSNLGIDSD DDDVAEMLTY QRPKREVDYK RLNEEMFGKL TENEKQSEDE DWGTNNRRKK 420 RRVDSAGVGV KSAEGSLDVK SNEKAQPQRR KLFRIPPEAV QVLRKSFAES ELPSREVKEN 480 LSTELGISFE KIDKWFKNTR CAALRDRKAE GNSRVAGPSK RSKQSAGKSG SLGKIDSVDN 540 SYLLPMPEII SVPTHPQGIP ERKPESTSRT VRRRVHDKGA PLCPPAPAEV KESTSPTTKP 600 GLNPSHVADR IINTEHRAAS REDPVAFSDD PFFDAILSYP TINTNDRAVS REDPVAFSDD 660 PFLDVMLANR DIYTEERAAS HEDVRRPSSD QPFLDVIQNV CGLEHRLQRL KGDMLSSAAA 720 PGGAGTAERD LQNQLVVLVP TAELKDKSQP SI

Sequence ? help Back to Top

Protein Sequence Length: 752 aa Download sequence

MNNSDKKSAC SIPRRSSERR KQSSSELVSS AKRSTGHNTS SSYKPDHCSP PKRTVRTVRN  60
VNLAKYIKNK YYRSPLSKRQ ASNAATGKTA TGPVRRRNRK RRRHNTDCDE ATRMERRARY  120
LLVKIKSEQN LIDAYSGDGW NGHSREKLKP EKELQRAQKQ IIKCKIAIRD IIHQLDLYSS  180
SGSMEDSVMP PDESVNPDNT ICSRCKSPES VPNNKFIFCE GACKMAYHEK CLEPPLDKSL  240
PTGGPGWLCK FCLCKMKILE AVNAHLGTSL TVMCPSKDIF KEATKQMDSE DGLGEDWLSE  300
YSGDEDYDPE ENDFTSSSLD SGEESISDQS NCSGSPLYSP NDDIPGFISA DFTDAEGFYH  360
TNSNLGIDSD DDDVAEMLTY QRPKREVDYK RLNEEMFGKL TENEKQSEDE DWGTNNRRKK  420
RRVDSAGVGV KSAEGSLDVK SNEKAQPQRR KLFRIPPEAV QVLRKSFAES ELPSREVKEN  480
LSTELGISFE KIDKWFKNTR CAALRDRKAE GNSRVAGPSK RSKQSAGKSG SLGKIDSVDN  540
SYLLPMPEII SVPTHPQGIP ERKPESTSRT VRRRVHDKGA PLCPPAPAEV KESTSPTTKP  600
GLNPSHVADR IINTEHRAAS REDPVAFSDD PFFDAILSYP TINTNDRAVS REDPVAFSDD  660
PFLDVMLANR DIYTEERAAS HEDVRRPSSD QPFLDVIQNV CGLEHRLQRL KGDMLSSAAA  720
PGGAGTAERD LQNQLVVLVP TAELKDKSQP SI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	99	103	RKRRR
2	99	126	RKRRRHNTDCDEATRMERRARYLLVKIK
3	100	127	RKRRRHNTDCDEATRMERRARYLLVKIK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.2	2e-79	HB-PHD family protein

Link Out ? help Back to Top
Ensembl	TRIDC6AG015580.6