PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC6AG017660.1
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MIKC_MADS
Protein Properties Length: 231aa    MW: 26117.7 Da    PI: 8.874
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC6AG017660.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.21.1e-231060151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      kri++ + rqv +skRr gi+KKA EL vLCda+vav+++sstgk + ++s
  TRIDC6AG017660.1 10 KRIQDATGRQVCYSKRRSGIMKKARELAVLCDAQVAVVVLSSTGKHHHFCS 60
                      79*********************************************9986 PP
2K-box83.93.4e-2872169198
             K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                       yq+++g+sl++++ e++q+ l++Lk+ ++nL++e+R+++GedL+ L++ eL+ Leq ++ +l+ +R++K++++++q+e+ ++k k  q+  k+
  TRIDC6AG017660.1  72 YQQATGTSLWTEQDEEMQRTLSRLKDINRNLRTEIRQRMGEDLDALEFGELRGLEQSVDAALEVVRQRKYQVITRQTETYKRKVKHSQKVYKS 164
                       89999**************************************************************************************** PP

             K-box  94 Lrkkl 98 
                       L+++l
  TRIDC6AG017660.1 165 LQQEL 169
                       *9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    
MGRLGKFEIK RIQDATGRQV CYSKRRSGIM KKARELAVLC DAQVAVVVLS STGKHHHFCS  60
DGADIKGILN RYQQATGTSL WTEQDEEMQR TLSRLKDINR NLRTEIRQRM GEDLDALEFG  120
ELRGLEQSVD AALEVVRQRK YQVITRQTET YKRKVKHSQK VYKSLQQELG FMDNPAFGFM  180
DNPMMGGWDG VAAVEMGGGG SEADMYAFHA VSSQLDLHGM AYRRSDCPLF G
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.13e-53MIKC_MADS family protein