PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6AG017730.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Whirly

Protein Properties

Length: 249aa MW: 27099.7 Da PI: 10.1984

Description

Whirly family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6AG017730.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Whirly	183.1	5.2e-57	72	209	2	139
Whirly 2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkal 94 v+k+kaal++ +++p f++++sg +++r+G+++l++ +a+++rkyd+ kkq fals+tev++l++l++ esceffhdp++k+s+eG+v+k+l TRIDC6AG017730.1 72 VFKGKAALSISPILPLFTKVESGGSRVDRNGSVMLTFFPAVGQRKYDYTKKQLFALSPTEVGSLISLGPAESCEFFHDPSMKSSHEGQVKKSL 164 9****************************************************************************************** PP Whirly 95 kvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 ++ Pl G+fvn++v n+++k+ne++svPv+kaefav+r++l+ TRIDC6AG017730.1 165 SITPLGSDNGYFVNITVLNNVQKTNERLSVPVTKAEFAVMRTALS 209 **999*******************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence
AFHSTWGSGA TNDGRAATML RLSRFLPSTS RGVTDLKDVL WSGSLTFKHA LSTSAANVDE 60 NASVKKYASY TVFKGKAALS ISPILPLFTK VESGGSRVDR NGSVMLTFFP AVGQRKYDYT 120 KKQLFALSPT EVGSLISLGP AESCEFFHDP SMKSSHEGQV KKSLSITPLG SDNGYFVNIT 180 VLNNVQKTNE RLSVPVTKAE FAVMRTALSF ALPHIMGWDQ ALSTHPQSTS TSASKPRFER 240 PNPASEWDR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71260.1	5e-75	Whirly family protein

Link Out ? help Back to Top
Ensembl	TRIDC6AG017730.1