PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC6AG017730.4
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Whirly
Protein Properties Length: 221aa    MW: 24553.5 Da    PI: 9.8028
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC6AG017730.4genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly183.53.7e-57541912139
            Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkal 94 
                       v+k+kaal++ +++p f++++sg  +++r+G+++l++ +a+++rkyd+ kkq fals+tev++l++l++ esceffhdp++k+s+eG+v+k+l
  TRIDC6AG017730.4  54 VFKGKAALSISPILPLFTKVESGGSRVDRNGSVMLTFFPAVGQRKYDYTKKQLFALSPTEVGSLISLGPAESCEFFHDPSMKSSHEGQVKKSL 146
                       9******************************************************************************************** PP

            Whirly  95 kvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                       ++ Pl    G+fvn++v n+++k+ne++svPv+kaefav+r++l+
  TRIDC6AG017730.4 147 SITPLGSDNGYFVNITVLNNVQKTNERLSVPVTKAEFAVMRTALS 191
                       ******999*********************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    
QWVYNKFFFV LCRGVTDLKD VLWSGSLTFK HALSTSAANV DENASVKKYA SYTVFKGKAA  60
LSISPILPLF TKVESGGSRV DRNGSVMLTF FPAVGQRKYD YTKKQLFALS PTEVGSLISL  120
GPAESCEFFH DPSMKSSHEG QVKKSLSITP LGSDNGYFVN ITVLNNVQKT NERLSVPVTK  180
AEFAVMRTAL SVCVILHGFI LFHKVAWVIG PWCSYLLFYL R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.13e-66Whirly family protein