PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC6AG017730.6
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Whirly
Protein Properties Length: 167aa    MW: 18351 Da    PI: 9.607
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC6AG017730.6genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly144.54.1e-45551642111
            Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkal 94 
                       v+k+kaal++ +++p f++++sg  +++r+G+++l++ +a+++rkyd+ kkq fals+tev++l++l++ esceffhdp++k+s+eG+v+k+l
  TRIDC6AG017730.6  55 VFKGKAALSISPILPLFTKVESGGSRVDRNGSVMLTFFPAVGQRKYDYTKKQLFALSPTEVGSLISLGPAESCEFFHDPSMKSSHEGQVKKSL 147
                       9******************************************************************************************** PP

            Whirly  95 kvePlpdGsGlfvnlsv 111
                       ++ Pl    G+fvn++ 
  TRIDC6AG017730.6 148 SITPLGSDNGYFVNITC 164
                       ******999*****985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    
LQWVYNKFFF VLCRGVTDLK DVLWSGSLTF KHALSTSAAN VDENASVKKY ASYTVFKGKA  60
ALSISPILPL FTKVESGGSR VDRNGSVMLT FFPAVGQRKY DYTKKQLFAL SPTEVGSLIS  120
LGPAESCEFF HDPSMKSSHE GQVKKSLSIT PLGSDNGYFV NITCLRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.11e-52Whirly family protein