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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | TRIDC6AG022190.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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| Family | NF-YC | ||||||||
| Protein Properties | Length: 256aa MW: 28338 Da PI: 4.6014 | ||||||||
| Description | NF-YC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NF-YC | 175.8 | 4.4e-55 | 78 | 182 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90
ql+ fw++q ie+atdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdi+d
TRIDC6AG022190.1 78 QLREFWATQmeeIEQATDFKNHTLPLARIKKIMKADEDVRMISAEAPVVFAKACEVFILELTLRSWMHTEENKRRTLQKNDIAAAITRTDIYD 170
89*****996677899***************************************************************************** PP
NF-YC 91 flvdivprdelk 102
flvdi+prd++k
TRIDC6AG022190.1 171 FLVDIIPRDDMK 182
*********975 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 256 aa Download sequence |
MEPSSQPEPV VGVATAGSQA YPPPAAYPAP AMPAAIPPGS QPAVPFPANP AQLSAQHQLV 60 YQQAQQFHQQ LQQQQQQQLR EFWATQMEEI EQATDFKNHT LPLARIKKIM KADEDVRMIS 120 AEAPVVFAKA CEVFILELTL RSWMHTEENK RRTLQKNDIA AAITRTDIYD FLVDIIPRDD 180 MKEEGLGLPR VGLPPAALGA PADAYPPYYY VQAQQVPGVG MMYGGQQGHP VAYAWQQPQG 240 QQAEEAPEEQ QQSPSN |
| Nucleic Localization Signal ? help Back to Top | |||
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| No. | Start | End | Sequence |
| 1 | 151 | 157 | RRTLQKN |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G56170.1 | 2e-64 | NF-YC family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | TRIDC6AG022190.1 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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