PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6AG023860.10

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 285aa MW: 30084.1 Da PI: 9.6302

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6AG023860.10	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.4	1.1e-07	81	106	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ + Ck Gd+C+FaHg+ TRIDC6AG023860.10 81 KTKLCNKYNTAEGCKWGDKCHFAHGE 106 8***********************96 PP
2	zf-CCCH	35.7	1.4e-11	251	276	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC++f + G C +GdrC+FaHg+ TRIDC6AG023860.10 251 FKTKLCDNFTK-GSCTFGDRCHFAHGE 276 69*******.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence
CRMSQHREMI IINKHSKCRC YQHLTAGCPF GEGCHFLHYF PGGHQAVAKM SNLGGQAFAH 60 PQGRMPSGSA VPDGHPTPTV KTKLCNKYNT AEGCKWGDKC HFAHGERELG KQTFINNSMP 120 PHMGPRPTGH FGPPAMPSPG MATPAGFGAS STAKVSVNAS LAGAIIGRGG VNTKQISRVT 180 GAKLAIRDHE SNEALKNIEL EGTFDQINNA SAMLRELIFR ISGGANAPPP GVIPAGGSHR 240 GGGGSGQGSN FKTKLCDNFT KGSCTFGDRC HFAHGENELR KSAAV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12130.1	3e-56	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC6AG023860.10