PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC6AG039630.1
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 216aa    MW: 22779.7 Da    PI: 9.042
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC6AG039630.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.44.5e-07110130425
                       ---SGGGGTS--TTTTT-SS-S CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                       ++C+ff++ G C yG++C++ H
  TRIDC6AG039630.1 110 RPCKFFLA-GDCTYGEKCRYPH 130
                       79******.**********965 PP
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    
MDFEADGRFG NKRVHNRLGP APGAASSSSS TKVCIHWRAG RCNRFPCPFL HSELPEAATT  60
KRPNQRDGPG GHVWRNPNSG GGGRGGGGFN KWGRGPGGAD GGVRHKVPDR PCKFFLAGDC  120
TYGEKCRYPH TYCMSNSITL LTPLQGHEKV VTGIALPAGS DKLYSGSKDG TVRLWDCQTG  180
QCAGVLPVGG EVGCMISEGP WLFVGIPDAV KVGNGA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18088GGGGRGGGG
28189GGGGRGGGG
38290GGGGRGGGG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.12e-61C3H family protein