PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6AG043080.19

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 369aa MW: 41387.7 Da PI: 7.3501

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6AG043080.19	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23	1.4e-07	45	64	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C f+++G C+yG+rC++ H+ TRIDC6AG043080.19 45 CT-FYQNGVCSYGSRCRYEHV 64 66.6666***********997 PP
2	zf-CCCH	23.8	7.8e-08	149	170	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ fa+ GtC+yG C+ +Hg TRIDC6AG043080.19 149 PICS-FAAAGTCPYGKECPQMHG 170 5788.*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence
FRRAWPGQAA MSNRSICKFF VNGACFKGDY CQFSHDWNDQ PNDVCTFYQN GVCSYGSRCR 60 YEHVEVSSEY TQPSTTAALA PSNSYLSWCP LCEGEIDVSN QTHKSLSVCS VHQSTWRFDD 120 EDCIPEDGNS LSSALTAQNQ ALHPLAHLPI CSFAAAGTCP YGKECPQMHG DPCTTCGKQC 180 LHPYRPSEGG AHIKLCKRNN KRLETLKKSE EMECSVCLDR VLSKPTAAEK RFGLLPECDH 240 AFCITCIRKW RSSSLTSSMD IDSTVKACPI CRKVSYYVIP SATWYSSKEE KQDIIDGYKA 300 KLKSIDCRYF DFGRDTCPFG GRCFYKHAYT DGRLEEPATV AVLHFHADNG SIEHARNIGL 360 AYLLSRLHL

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence

FRRAWPGQAA MSNRSICKFF VNGACFKGDY CQFSHDWNDQ PNDVCTFYQN GVCSYGSRCR  60
YEHVEVSSEY TQPSTTAALA PSNSYLSWCP LCEGEIDVSN QTHKSLSVCS VHQSTWRFDD  120
EDCIPEDGNS LSSALTAQNQ ALHPLAHLPI CSFAAAGTCP YGKECPQMHG DPCTTCGKQC  180
LHPYRPSEGG AHIKLCKRNN KRLETLKKSE EMECSVCLDR VLSKPTAAEK RFGLLPECDH  240
AFCITCIRKW RSSSLTSSMD IDSTVKACPI CRKVSYYVIP SATWYSSKEE KQDIIDGYKA  300
KLKSIDCRYF DFGRDTCPFG GRCFYKHAYT DGRLEEPATV AVLHFHADNG SIEHARNIGL  360
AYLLSRLHL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-116	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC6AG043080.19