PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6AG058590.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LBD

Protein Properties

Length: 207aa MW: 21311.3 Da PI: 7.989

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6AG058590.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	118.1	5.4e-37	18	119	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C aCk+lrr+C+++Cv+apyf +eq +++fa++hk+FGasn kll++lp +r +a+ +++yeA+ r+rdPvyG+v+ i++lqqq++ l+a TRIDC6AG058590.2 18 PCGACKFLRRRCVAECVFAPYFSSEQgAARFAAIHKVFGASNAAKLLAHLPLADRCEAVVTITYEAQSRLRDPVYGCVAQIFALQQQVAILQA 110 7*********************9989************************************************************* PP DUF260 93 elallkeel 101 +l ++++++ TRIDC6AG058590.2 111 QLMQARAQI 119 9999875 PP

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence
MAAAGGGAGG VAGVAGSPCG ACKFLRRRCV AECVFAPYFS SEQGAARFAA IHKVFGASNA 60 AKLLAHLPLA DRCEAVVTIT YEAQSRLRDP VYGCVAQIFA LQQQVAILQA QLMQARAQIA 120 CGVQSTASPV SHQWPDSSSS SIASLLRQQE VNSGSFATGG PLLPELMGGD VSMLQQHCGG 180 KVEGGGGGAG DLQYLAQAMM RSSNYSL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	179	187	GGKVEGGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42430.1	6e-45	LBD family protein

Link Out ? help Back to Top
Ensembl	TRIDC6AG058590.2