PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6BG002730.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

M-type_MADS

Protein Properties

Length: 239aa MW: 26791 Da PI: 10.1079

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6BG002730.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	43.3	4.5e-14	23	66	3	46
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 i n+s rq t+ kR + ++KKA E+ +LC+a+++v+++++ ++ TRIDC6BG002730.1 23 IRNDSARQDTLKKRSKNLMKKAGEVGTLCNAKACVLVYGEGATV 66 89*************************************97665 PP

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence
FPPFANCFPQ STMARKKVAL RYIRNDSARQ DTLKKRSKNL MKKAGEVGTL CNAKACVLVY 60 GEGATVPEVF PSHAEAVAIL NRFKSMPEVA RLKKTMDQKS VLSQRVAKLR DQVQKTRCEL 120 QDRETKFLLH EAMVSGRLPG NIAELTLMAW KLELMLKSLG ERIAKMSGQP PVYQTQAPYI 180 TDNMDMGPPA MYRVPPHQQE GWLETVRSEG DHGTQIYNGH STGGHNGTNF GFIPSHMNM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	2e-23	M-type_MADS family protein

Link Out ? help Back to Top
Ensembl	TRIDC6BG002730.1