PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC6BG018610.1
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Nin-like
Protein Properties Length: 360aa    MW: 38352.8 Da    PI: 4.8872
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC6BG018610.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK863.3e-27129176552
            RWP-RK   5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                       +sl++l+ yFs+++kdAA++Lgvc+T++KriCRq+GI+RWP+Rki+++
  TRIDC6BG018610.1 129 VSLKELQGYFSGSLKDAARSLGVCPTTMKRICRQHGISRWPFRKISKV 176
                       799******************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    
LPPSAMDVGD DGQVEEECVV LEFFLPPDWR SAGEQKAMVD AVAATIRKEC SGNHLEATSD  60
LQDLSLEAVL ADADTAHELN NRGDYVTNDS DEEDGDQAGG VHGADQSGAE DRVPPPETKK  120
TGRKAGRPVS LKELQGYFSG SLKDAARSLG VCPTTMKRIC RQHGISRWPF RKISKVNRAL  180
GKIRAIESVD CSSKPTAASS STSRRAPAPH LPCLSSALGE DTSSQGSSQD PPPLTKTTMR  240
KSLLWRSNGA EGELVTIKAN YRGDIIRFRV PCSAGVAAVK EEVAKRLGLD AGTFDVKYLD  300
DDHEWVLLSC DADFQECLDV APGLPASSTM AGGAGAVSPV VRLMVQEVAD NHRSSCGSSD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76350.12e-31Nin-like family protein