PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6BG021410.10

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HB-PHD

Protein Properties

Length: 603aa MW: 66670.4 Da PI: 5.1106

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6BG021410.10	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.4	2.8e-09	307	353	6	52
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 ++ +e +++L + F+++ p +e +e L+++lg++ +++ WF+N R TRIDC6BG021410.10 307 RIPPEAVQVLRKSFAESELPAREVKESLSTELGISFEKIDKWFKNTR 353 667899***************************************99 PP
2	PHD	30.9	6.2e-11	62	115	1	50
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS.TBSSHHHHT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg.ewlCeeCke 50 +C+ C++ s ++++++C+g Ck ++H kC +++l+++ g wlC+ C + TRIDC6BG021410.10 62 ICSRCKSpeSVPNNKFIFCEGaCKMAYHEKCSEPPLDRSLPTGGpGWLCKFCLC 115 6999987778***966**********966555559*****86 PP

Sequence ? help Back to Top
Protein Sequence Length: 603 aa Download sequence
NSREKLKPEK ELQRAKRQII KCKIAIRDII HQLDLYSSSG SMEDSVMPPD ESVKSVNPDN 60 TICSRCKSPE SVPNNKFIFC EGACKMAYHE KCSEPPLDRS LPTGGPGWLC KFCLCKMKIL 120 EAVNAHLGTS LTVMCPSKDI FKEATKEVDS EDGLGEDWLS EYSGDEDYDP EENDFTSSSL 180 DSGEESISDQ SNCSGSPLYS PNDDIPGFIS ADFTDAEGFY HTNSNLGIDS GDDDVAEMLT 240 YQRPKREEMF GKLTENEKQS EDEDWGTNNR RKKRRVHSAG VGVKSAEGLS DVKSNEKAQP 300 QRRKLFRIPP EAVQVLRKSF AESELPAREV KESLSTELGI SFEKIDKWFK NTRCAALRDR 360 KAEGNSRVAG PSKRSRRSAG KSGSSVKIDS VDNSYLIPAS EIISVPTHPQ GIPERKPEST 420 SRTVRRLVHD KGAPLCPPAE VKESTSPTTK PGLNPSHVAD RIINTEHRAA SREAPVAFSD 480 DPFFDAILSY PTINTNDRAV SREDPLAFSD DPFLDVMLAN RDIYTEERAV SHEDVKRPSG 540 DQPFLDVIQN VCGLEHRLQR LKGDMLSSGA APGGAGTAER DLQNQLVVLV PTAELKDKSQ 600 PSI

Sequence ? help Back to Top

Protein Sequence Length: 603 aa Download sequence

NSREKLKPEK ELQRAKRQII KCKIAIRDII HQLDLYSSSG SMEDSVMPPD ESVKSVNPDN  60
TICSRCKSPE SVPNNKFIFC EGACKMAYHE KCSEPPLDRS LPTGGPGWLC KFCLCKMKIL  120
EAVNAHLGTS LTVMCPSKDI FKEATKEVDS EDGLGEDWLS EYSGDEDYDP EENDFTSSSL  180
DSGEESISDQ SNCSGSPLYS PNDDIPGFIS ADFTDAEGFY HTNSNLGIDS GDDDVAEMLT  240
YQRPKREEMF GKLTENEKQS EDEDWGTNNR RKKRRVHSAG VGVKSAEGLS DVKSNEKAQP  300
QRRKLFRIPP EAVQVLRKSF AESELPAREV KESLSTELGI SFEKIDKWFK NTRCAALRDR  360
KAEGNSRVAG PSKRSRRSAG KSGSSVKIDS VDNSYLIPAS EIISVPTHPQ GIPERKPEST  420
SRTVRRLVHD KGAPLCPPAE VKESTSPTTK PGLNPSHVAD RIINTEHRAA SREAPVAFSD  480
DPFFDAILSY PTINTNDRAV SREDPLAFSD DPFLDVMLAN RDIYTEERAV SHEDVKRPSG  540
DQPFLDVIQN VCGLEHRLQR LKGDMLSSGA APGGAGTAER DLQNQLVVLV PTAELKDKSQ  600
PSI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.2	2e-33	HB-PHD family protein

Link Out ? help Back to Top
Ensembl	TRIDC6BG021410.10