PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6BG023520.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Whirly

Protein Properties

Length: 252aa MW: 27567.3 Da PI: 10.2883

Description

Whirly family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6BG023520.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Whirly	183	5.5e-57	75	212	2	139
Whirly 2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkal 94 v+k+kaal++ +++p f++l+sg +++r+G+++l++ +a+++rkyd+ kkq fals+tev++l++l++ esceffhdp++k+s+eG+v+k+l TRIDC6BG023520.2 75 VFKGKAALSISPILPLFTKLESGGSRVNRNGSVMLTFFPAVGQRKYDYTKKQLFALSPTEVGSLISLGPAESCEFFHDPSMKSSHEGQVKKSL 167 9****************************************************************************************** PP Whirly 95 kvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 ++ Pl G+fvn++v n+++k+ne++svPv+kaefav+r++l+ TRIDC6BG023520.2 168 SITPLGSDNGYFVNITVLNNVQKTNERLSVPVTKAEFAVMRTALS 212 **999*******************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence
ALPAFPFPGA WARPTTDEQA TMLRLSRFLP STSRGVTDLK DVLWSSSLTF KHALSTSAAN 60 VDESTSARKF ASYTVFKGKA ALSISPILPL FTKLESGGSR VNRNGSVMLT FFPAVGQRKY 120 DYTKKQLFAL SPTEVGSLIS LGPAESCEFF HDPSMKSSHE GQVKKSLSIT PLGSDNGYFV 180 NITVLNNVQK TNERLSVPVT KAEFAVMRTA LSFALPHIMG WDQALSTHPQ STSTSASKPR 240 FERPNPASEW DR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71260.1	1e-75	Whirly family protein

Link Out ? help Back to Top
Ensembl	TRIDC6BG023520.2