PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC6BG028070.3
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MIKC_MADS
Protein Properties Length: 215aa    MW: 24375.6 Da    PI: 6.9499
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC6BG028070.3genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.41.7e-27959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krien +nrqvtfskRr g+lKKA+EL vLCda+v v+ifsstg+++eyss
  TRIDC6BG028070.3  9 KRIENATNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGRMFEYSS 59
                      79***********************************************96 PP
2K-box72.61.2e-2471170199
             K-box   1 yqkssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 
                       yq++++++  e ++ ++   e++++++e+e+L   +R++ G+dL+sLsl + + +eqqLe s+ k+R++K++ll +q+++l++ke+ l+++n 
  TRIDC6BG028070.3  71 YQNATNSQfEEINHDQQIFVEMTRMRNEMEKLDGAIRRYTGDDLSSLSLADVNDIEQQLEFSVAKVRARKHQLLNQQLDNLRRKEHILEDQNS 163
                       6777777777778889999************************************************************************** PP

             K-box  93 aLrkkle 99 
                        L +++ 
  TRIDC6BG028070.3 164 FLCRMIS 170
                       **99886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    
MGRGKIEIKR IENATNRQVT FSKRRGGLLK KANELAVLCD ARVGVVIFSS TGRMFEYSSP  60
ASSLRDLIEQ YQNATNSQFE EINHDQQIFV EMTRMRNEME KLDGAIRRYT GDDLSSLSLA  120
DVNDIEQQLE FSVAKVRARK HQLLNQQLDN LRRKEHILED QNSFLCRMIS ENQHGSDGKM  180
AVMPPVLSML TPAFPATPYY TGEESSSTAL QLTSP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26310.11e-43MIKC_MADS family protein