PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6BG029180.6

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 260aa MW: 27128.7 Da PI: 8.8876

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6BG029180.6	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.6	9.3e-08	63	88	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ + Ck Gd+C+FaHg+ TRIDC6BG029180.6 63 KTKLCNKYNTAEGCKWGDKCHFAHGE 88 8***********************96 PP
2	zf-CCCH	35.9	1.2e-11	226	251	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC++f + G C +GdrC+FaHg+ TRIDC6BG029180.6 226 FKTKLCDNFTK-GSCTFGDRCHFAHGE 251 69*******.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence
CPPNCLTAGC PFGEGCHFLH YFPGGHQAVA KMSNLGGQAF AHPQGRVPAG SAVPDGHPTP 60 TVKTKLCNKY NTAEGCKWGD KCHFAHGERE LGKQTFINNS MPPHMGPRPT GHFGPPAMPS 120 PGMATPAGFG ASSTAKVSVD ASLAGAIIGR GGVNTKQISR VTGAKLAIRD HESNEALKNI 180 ELEGTFDQIN NASAMLRELI FRISGGANAP PPGVISAGGS HRGSNFKTKL CDNFTKGSCT 240 FGDRCHFAHG ENELRKSAAA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06770.1	1e-57	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC6BG029180.6