PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC6BG041870.1
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 254aa    MW: 27917.1 Da    PI: 5.9613
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC6BG041870.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.83.9e-161461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT+eEd  lv  ++++G  +W++ ++  g+ R++k+c++rw +yl
  TRIDC6BG041870.1 14 RGPWTAEEDMTLVAHIERHGHSNWRALPKQAGLLRCGKSCRLRWINYL 61
                      89******************************99************97 PP
2Myb_DNA-binding569.1e-1867112148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg++T eE+e +++++++lG++ W+tIa++++ gRt++++k+ w+++l
  TRIDC6BG041870.1  67 RGNFTSEEEEAIIQLHAMLGNR-WSTIAARLP-GRTDNEIKNVWHTHL 112
                       89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    
MVRAPCCEKM GLKRGPWTAE EDMTLVAHIE RHGHSNWRAL PKQAGLLRCG KSCRLRWINY  60
LRPDIKRGNF TSEEEEAIIQ LHAMLGNRWS TIAARLPGRT DNEIKNVWHT HLKKRVQSSS  120
KTSGQAAPNR KAKKLSVAAS ALEGPTSEPA SSSSGQSLSM SPGQSLSTSS ADDYSMAWSL  180
ENTGSSSSES EEFQIDDSFW SETLAMSVDS FGSGMETNDT FGVDSASPSS TNDEMDFWVT  240
LFMQASDIQS LSQI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.17e-74MYB family protein