PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6BG045310.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 521aa MW: 55246.4 Da PI: 6.1379

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6BG045310.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.1	6.7e-05	45	62	2	19
EETTTTEEESSHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrH 19 +C++Cgk F+++ +L H TRIDC6BG045310.1 45 VCENCGKEFTSWKSLLDH 62 6***************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 521 aa Download sequence
AAEDAFDDDG GGVGESSEAG SPSPTTTKRM YGLRANPGRL RNYRVCENCG KEFTSWKSLL 60 DHGRCSFDED DDLDGSLRSS SPLHNNTDEG IEEVEEEEGD LALASGWSKG KRSRRAKVMV 120 VGSGAIAEVQ QPAPSSEEED LANCLVMLSS SRVTQPAVHV DADQESSASA SKDEERNRLL 180 VPQPLSIIPP MTAQFKFSAP QVVVAQHVPT VPRGLFECKA CKKVFTSHQA LGGHRASHKK 240 VKGCFAAKLE SSRNETTHQQ TMASAALHDN TKAIPEVVGD TSTAEGRTGN LDANASGKAT 300 SVGAGEVGVP TAATEMAIMP IADAAPAPAA FSPFKKKGKV HECSICHRVF TSGQALGGHK 360 RCHWLTSSAT DPAKLQPVVP DHLMAAMCHH LTLGRPMFDT ADQRILDLNV PTNPSAEAIA 420 TRQAAELNDI PLCLNAPASM YVQSWTRHSN ASHVNKTGTS SRNDAAAGGG TATEDEADST 480 SAKRAKVSDL KDMKVAGESL SWLQVGIGIS SSENNEKNTQ E

Sequence ? help Back to Top

Protein Sequence Length: 521 aa Download sequence

AAEDAFDDDG GGVGESSEAG SPSPTTTKRM YGLRANPGRL RNYRVCENCG KEFTSWKSLL  60
DHGRCSFDED DDLDGSLRSS SPLHNNTDEG IEEVEEEEGD LALASGWSKG KRSRRAKVMV  120
VGSGAIAEVQ QPAPSSEEED LANCLVMLSS SRVTQPAVHV DADQESSASA SKDEERNRLL  180
VPQPLSIIPP MTAQFKFSAP QVVVAQHVPT VPRGLFECKA CKKVFTSHQA LGGHRASHKK  240
VKGCFAAKLE SSRNETTHQQ TMASAALHDN TKAIPEVVGD TSTAEGRTGN LDANASGKAT  300
SVGAGEVGVP TAATEMAIMP IADAAPAPAA FSPFKKKGKV HECSICHRVF TSGQALGGHK  360
RCHWLTSSAT DPAKLQPVVP DHLMAAMCHH LTLGRPMFDT ADQRILDLNV PTNPSAEAIA  420
TRQAAELNDI PLCLNAPASM YVQSWTRHSN ASHVNKTGTS SRNDAAAGGG TATEDEADST  480
SAKRAKVSDL KDMKVAGESL SWLQVGIGIS SSENNEKNTQ E

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19580.2	5e-16	C2H2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC6BG045310.1