PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC6BG046540.2
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 193aa    MW: 20272.9 Da    PI: 8.7174
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC6BG046540.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.63.9e-0787107425
                       ---SGGGGTS--TTTTT-SS-S CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                       ++C+ff++ G C yG++C++ H
  TRIDC6BG046540.2  87 RPCKFFLA-GDCTYGEKCRYPH 107
                       79******.**********965 PP
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    
ASSSSSTKVC IHWRAGRCNR FPCPFLHSEL PEAATTKRPN QRDGPGGHVW RNPNSGGGGR  60
GGGGGFNKWG RGPGGADGGV RHKVPDRPCK FFLAGDCTYG EKCRYPHTYC MSNSITLLTP  120
LQGHEKVVTG IALPTGSDKL YSGSKDGTVR LWDCQTGQCA GVLPVGGEVG CMISEGPWLF  180
VGIPDAVKVG DGA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15665GGGGRGGGGG
25766GGGGRGGGGG
35867GGGGRGGGGG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.15e-58C3H family protein