PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC6BG046780.2
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MIKC_MADS
Protein Properties Length: 154aa    MW: 17779.3 Da    PI: 9.1604
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC6BG046780.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF101.43.5e-321463150
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                      krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gklye+ 
  TRIDC6BG046780.2 14 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFG 63
                      79**********************************************95 PP
2K-box77.92.5e-2683152675
             K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellle 75 
                       +++ + ++++s++qe++kLk++ e Lqr+qRhllGedL++Ls+keLqqLe+qLe sl+  R++K  +l e
  TRIDC6BG046780.2  83 DSNGALSETQSWYQEMSKLKAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECSLSLARQRKLYVLSE 152
                       344466788*******************************************************999876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    
EEEEIMGRGR VELKRIENKI NRQVTFSKRR NGLLKKAYEL SVLCDAEVAL IIFSSRGKLY  60
EFGSAGTTKT LERYQHCCYN AQDSNGALSE TQSWYQEMSK LKAKFEALQR TQRHLLGEDL  120
GPLSVKELQQ LEKQLECSLS LARQRKLYVL SEKT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.13e-70MIKC_MADS family protein