PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6BG054970.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MIKC_MADS

Protein Properties

Length: 228aa MW: 25450.6 Da PI: 5.7172

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6BG054970.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	86.4	1.6e-27	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+ rqvtfskRr g++KKAeELSvLCda+va+i+fsstgkl ++s TRIDC6BG054970.2 9 KRIESAAARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSQFAS 59 79*********************************************9986 PP
2	K-box	56.7	1e-19	90	170	18	98
K-box 18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + ++a+L++++ + +R++ Ge+Le Ls+ eLqqLe++Le++l ++ ++K++ +leqi+el +k +l een++Lr+++ TRIDC6BG054970.2 90 HSKYANLNDQLAEASLRLRQMRGEELEGLSVDELQQLEKNLETGLHRVLQTKDQQFLEQINELHRKSSQLAEENMKLRNQV 170 345666666666666899************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence
MARERREIKR IESAAARQVT FSKRRRGLFK KAEELSVLCD ADVALIVFSS TGKLSQFASS 60 SMNEIIDKYS THSKNLGKTD QPALDLNLEH SKYANLNDQL AEASLRLRQM RGEELEGLSV 120 DELQQLEKNL ETGLHRVLQT KDQQFLEQIN ELHRKSSQLA EENMKLRNQV GQIPTAGKLV 180 VADTENIVAE DGQSSESVMT ALHSGSSQDN DDGSDVSLKL GLPCLPWK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22540.1	1e-75	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	TRIDC6BG054970.2