PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC7AG043290.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LSD

Protein Properties

Length: 155aa MW: 16337.6 Da PI: 9.5524

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC7AG043290.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	21.1	5.1e-07	45	69	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gC l Y rGA +VRC+ C+ V TRIDC7AG043290.1 45 CNGCFSLVLYNRGAANVRCSGCNRV 69 **********************966 PP
2	zf-LSD1	39.1	1.2e-12	83	107	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg Crt+L+YP+GA+ V Ca+C++V TRIDC7AG043290.1 83 CGRCRTTLMYPPGASTVGCANCQHV 107 ************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence
SPTHLSLSAS AIGASRLLGS LLGMPRCTSS VNYQTETATM SELICNGCFS LVLYNRGAAN 60 VRCSGCNRVN STRSASQIAH LTCGRCRTTL MYPPGASTVG CANCQHVNPV RTQGSSAPPD 120 AHARPQTVLV ENPRTMNDKG KLVSNVAVGV TSWKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	3e-27	LSD family protein

Link Out ? help Back to Top
Ensembl	TRIDC7AG043290.1