PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC7AG056000.7

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 259aa MW: 26828.5 Da PI: 9.5316

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC7AG056000.7	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.2	5.7e-08	61	86	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ f Ck G++C+FaHg+ TRIDC7AG056000.7 61 KTRLCNKFNTAEGCKWGNKCHFAHGE 86 9***********************96 PP
2	zf-CCCH	37.7	3.4e-12	225	250	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC++f + G C +GdrC+FaHg+ TRIDC7AG056000.7 225 FKTKLCDNFNK-GSCTFGDRCHFAHGE 250 69*******.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence
SVCSTAGCPF GSSCHFLHNF PGGHQAVSKM TNLGGPAVSA PQGRMPMGPG VPDGPPTPSL 60 KTRLCNKFNT AEGCKWGNKC HFAHGERELG KPMLLNNSMA PPMGPRPNGH FQPSPMPGPD 120 MVPPSTFGAS ATAKISVDAS LAGAIIGKGG VNTKHISRMT GAKLAIRDNE ADPNHKNIEL 180 EGSFDQVNHA SAMVKELILR IGGNAPPQAK NPGRGPAGGG GGSNFKTKLC DNFNKGSCTF 240 GDRCHFAHGE SELRKSAAA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06770.1	1e-54	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC7AG056000.7