PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC7AG064390.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 596aa MW: 66565.4 Da PI: 7.8094

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC7AG064390.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.3	2e-06	59	79	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ + G+C+ G++C++ H+ TRIDC7AG064390.1 59 ECNMYKM-GFCPNGPNCRYKHV 79 6666666.*************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 596 aa Download sequence
YRQTVCRHWL RGLCMKGEAC GFLHQFDKAR MPVCRFFRDY GECREPDCAY KHSYDDVKEC 60 NMYKMGFCPN GPNCRYKHVK LPGPPPPVEE VLAKILQMRS SNFNKFNQHR NNNYNQQGDR 120 PRPPPGSGLP NQNSTDNAST MQPAAGQQAQ TMNQQPQQKQ QQVQQQQKPN TNDQVQGVPN 180 GSSNQPTRLA TPLPQGSSRY FIVKSCNREN LEISVQQGIW ATQRSNEAKL NEAFESMDNV 240 ILIFSINRTR NFQGCAKMTS RIGGYIGGGN WKSANGTAHY GRNFSLQWLK LCELSFQKTH 300 HLRNPYNDNL PVKISRDCQE LEPFIGEQLA SLLYLEPDSE LTAMLVAAEA KREEEKAKGV 360 SADEAADNQD IVLFEDNEEE EEEESEEEDE NNGQESQGRG RGRGMMWPPQ MQMPRGPMMG 420 PRGFPPNMMG DFGGGFGFGM PDPFGMPRGF PPFGGPRFPG DFPRGPMPGM VFPGRPPQPG 480 GMFPMGLEMM MGPGRGPLMG MGGPGRPNRP IGMAPFMPPP PPRPVKRDQR RPGGDNRGDR 540 YETGSDQGSR GHDNNAGNSG ADGNRSQSGD RFGRSAFRDD DSESDEEAAP RRSRKR

Sequence ? help Back to Top

Protein Sequence Length: 596 aa Download sequence

YRQTVCRHWL RGLCMKGEAC GFLHQFDKAR MPVCRFFRDY GECREPDCAY KHSYDDVKEC  60
NMYKMGFCPN GPNCRYKHVK LPGPPPPVEE VLAKILQMRS SNFNKFNQHR NNNYNQQGDR  120
PRPPPGSGLP NQNSTDNAST MQPAAGQQAQ TMNQQPQQKQ QQVQQQQKPN TNDQVQGVPN  180
GSSNQPTRLA TPLPQGSSRY FIVKSCNREN LEISVQQGIW ATQRSNEAKL NEAFESMDNV  240
ILIFSINRTR NFQGCAKMTS RIGGYIGGGN WKSANGTAHY GRNFSLQWLK LCELSFQKTH  300
HLRNPYNDNL PVKISRDCQE LEPFIGEQLA SLLYLEPDSE LTAMLVAAEA KREEEKAKGV  360
SADEAADNQD IVLFEDNEEE EEEESEEEDE NNGQESQGRG RGRGMMWPPQ MQMPRGPMMG  420
PRGFPPNMMG DFGGGFGFGM PDPFGMPRGF PPFGGPRFPG DFPRGPMPGM VFPGRPPQPG  480
GMFPMGLEMM MGPGRGPLMG MGGPGRPNRP IGMAPFMPPP PPRPVKRDQR RPGGDNRGDR  540
YETGSDQGSR GHDNNAGNSG ADGNRSQSGD RFGRSAFRDD DSESDEEAAP RRSRKR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	525	531	VKRDQRR

Link Out ? help Back to Top
Ensembl	TRIDC7AG064390.1