PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC7BG004950.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

CO-like

Protein Properties

Length: 243aa MW: 25002.8 Da PI: 6.2631

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC7BG004950.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.2	2.5e-06	14	56	5	42
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ ++ + l+C + lC C + H+ H++vpl TRIDC7BG004950.2 14 PCAVCGGA-AALYCPADAAALCVPCDAAVHSAnplasrHERVPL 56 7****9.*******************66999999999986 PP
2	CCT	66.3	8.3e-23	159	202	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R+++++RY+eKrk+RkF+K+irY+sRKa+Ae RpR+KGrFvk++ TRIDC7BG004950.2 159 RAERVRRYREKRKNRKFQKTIRYASRKAYAEARPRIKGRFVKRP 202 99****************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence
MESEGSTSPN GGAPCAVCGG AAALYCPADA AALCVPCDAA VHSANPLASR HERVPLAAAV 60 AATSGVYDLF AADDEGGSSW PGQGSPSSGS SGFSNGGVVE MSLFDLLSDV DLVATGAGGS 120 MLSDGPLWLQ PGLAADASAA WTSSWSPAEA VVVPSAADRA ERVRRYREKR KNRKFQKTIR 180 YASRKAYAEA RPRIKGRFVK RPAAASVDDD NTSAAEAAAK FWLSFSDNSV GFQVASHGVV 240 PSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	5e-11	CO-like family protein

Link Out ? help Back to Top
Ensembl	TRIDC7BG004950.2