PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC7BG034560.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LSD

Protein Properties

Length: 96aa MW: 10122.6 Da PI: 8.7774

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC7BG034560.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	22.5	1.9e-07	66	88	1	23
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCd 23 C+gC l Y rGA +VRC+ C+ TRIDC7BG034560.1 66 CNGCFSLVLYNRGAANVRCSRCN 88 **********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 96 aa Download sequence
SSPSSLSSLI SLATYFFHLP LSPTHLSLSA SAIGASRLLG SLLGMPRCTS SVNYQTETAA 60 MSELICNGCF SLVLYNRGAA NVRCSRCNML NSTRSG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	4e-07	LSD family protein

Link Out ? help Back to Top
Ensembl	TRIDC7BG034560.1